Data Visualization

Raw Data

To view the tomographic raw data we suggest to install Fiji and add the HDF plugin

Other options are hdfview or argos

To view the tomographic raw data we suggest to install Fiji and add the HDF plugin

Other options are hdfview or argos

After your data are reconstructed you can visualize using Dragonfly

Login at the beamline Linux machine and then type:

[usertxm@txmthree]$ cd /local/usertxm/software/dragonfly
[usertxm@txmthree]$ ./Dragonfly

Below is a 3D rendering image gallery of recently measured samples using Dragonfly.

Sample/Description	resolution(nm)	Images
	50

To view the tomographic reconstructed data you can use the Neuroglancer server hosted by ALCF ALCF Neuroglancer.

The data link to be used in source has the following syntax:

zarr2:://globus+https://your-zarr-file-path.zarr

Neuroglancer data Visualization

To adjust the contrast, you can use the Palette on the top right